SEQAFRICA Courses

Completed 2021

Recordings and training material from these courses are Freely Available on each course page

Introduction to WGS in AMR surveillance

​This course is an introduction to Whole Genome Sequencing (WGS) and its use in AMR surveillance for those who would like to know more about why it is important and how can it can be incorporated.

Click below to read more and find resources and recordings.

Read more

WGS workflow - from isolate to analysis

​​This course is to be considered a continuation of Introduction to WGS in AMR. Here the entire workflow, from sampled isolate to finished analysis of sequencing data will be covered in lectures and hands-on exercises.

Click below to read more and find resources for participants.

SARS-CoV-2 - whole genome sequencing

​​This course specifically cover the entire workflow from a SARS-CoV-2 sample to finished analysis of sequencing data. It consists of lectures and hands-on exercises.

Click below to read more and find resources for participants.​

Coming up​ 2022

Basic bioinformatics using command line

​​This page provides an overview of available online courses that cover basic bioinformatics and is well suited for those who would like to move from using online tools to command line tools to increase their analysis throughput.

Click below to read more and find resources  for participants.

Advanced bioinformatics using command line

​​These courses covers advanced bioinformatics for those who are already using WGS in AMR surveillance and have experience with command line tools.

Click below to read more and find resources  for participants.

In-person follow-up training on WGS for AMR​

​​This course provides hands-on experience of all the wet-lab steps required to conduct WGS using Illumina and ONT sequencing and will refresh the use of freely available online tools to analyse the output.

Click below to read more and find resources  for participants.

Disclaimer​

​Information presented on this website is considered public information (unless otherwise noted) and may be distributed or copied. Use of appropriate byline/photo/image credit is requested. While The National Food Institute makes every effort to provide accurate and complete information, various data such as names, telephone numbers, etc. may change prior to updating. The National Food Institute welcomes suggestions on how to improve our home page and correct errors. The National Food Institute provides no warranty, expressed or implied, as to the accuracy, reliability or completeness of furnished data.

Some of the documents on this server may contain live references (or pointers) to information created and maintained by other organizations. Please note that The National Food Institute does not control and cannot guarantee the relevance, timeliness, or accuracy of these outside materials.

INFORMATION​

Technical University of Denmark, National Food Institute

CVR: 30060946

AdDress

Denmark

DK-2800 Lyngby

Kemitorvet Building 204​

Contact us

Tlf.: +45 3588 6601

E-mail: suska@food.dtu.dk